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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs4646587 chr15:58304783 A/T ARID3A chr19:925781-975939:+ -0.58 -6.4 3.63E-10 Box Plot
THCA rs4662204 chr2:144155296 T/A ZNF296 chr19:45574758-45579846:- 0.25 5.9 6.81E-9 Box Plot
THCA rs4662328 chr2:144160056 A/C ZNF296 chr19:45574758-45579846:- 0.26 6.18 1.41E-9 Box Plot
THCA rs466926 chr2:119465597 C/T CHRM5 chr15:34260921-34359658:+ 0.29 5.87 8.03E-9 Box Plot
THCA rs4671393 chr2:60720951 A/G HBG1 chr11:5269313-5271122:- -0.45 -6.42 3.33E-10 Box Plot
THCA rs4674192 chr2:218429292 C/T LRRC2 chr3:46556913-46621589:- 0.19 5.92 6.14E-9 Box Plot
THCA rs4679201 chr3:125772230 A/G ROPN1 chr3:123687368-123711025:- 0.33 6.17 1.42E-9 Box Plot
THCA rs4679202 chr3:125779468 C/T ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs4679203 chr3:125780347 C/T ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs4679705 chr3:153044220 T/C HNRPLL chr2:38790328-38830178:- 0.37 6.14 1.73E-9 Box Plot
THCA rs4696036 chr4:173885229 G/T GALNTL6 chr4:172733405-173962710:+ 0.53 12.49 3.39E-31 Box Plot
THCA rs4696037 chr4:173885506 C/T GALNTL6 chr4:172733405-173962710:+ -0.53 -12.25 3.38E-30 Box Plot
THCA rs4711112 chr6:26470862 A/G ZNF322B chr9:99957633-99961910:- 0.49 6.87 1.96E-11 Box Plot
THCA rs4711121 chr6:26756442 T/C ZNF322B chr9:99957633-99961910:- -0.61 -7.93 1.62E-14 Box Plot
THCA rs4711122 chr6:26758479 C/T ZNF322B chr9:99957633-99961910:- -0.66 -10.73 3.37E-24 Box Plot